How to Reuse Microgreen Soil: Is It Worth It?

One of the most common questions we receive is:

“Can I reuse microgreen soil after harvesting?”

Our answer has always been, “No, it’s best to use new soil to reduce the possibility of disease. Plus, the new microgreens will grow better on fresh soil.”

The disease issue is no joke, but we say no because we thought the microgreens would grow like crap.

microgreens grown on reused microgreen soil

We Ran A Test Reusing Microgreen Soil

This article presents test results where we replanted three trays after harvesting broccoli microgreens.

We reused microgreen soil from trays and planted Triton RadishWasabi Mustard, and Waltham Broccoli seeds. 

We even shot a video of the test showing you what we did and presented the results, and discussed it in the Microgreens Podcast too!

Spoiler Alert: We were shocked!

But first, let’s go over the reasons why reusing microgreen soil might not be a good idea.

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FREE Home Microgreens Grow course that teaches you the basics of growing microgreens in your home! There are 12 video lessons (over 120 minutes), downloads, and more written information and tips!

Listen to an Audio Version of the Article

We don’t just read the article word for word in the audio version; it’s a stand on its own piece of content that includes more details on the topic. These can include more tips, opinions, details, data, and information on this and related topics. 

The Microgreens Podcast Episode 009

Reasons We Thought Reusing Microgreen Soil Wouldn’t Work

We have lots of reasons why it shouldn’t work.

All That Junk

Look at a tray after you finish harvesting it.

reusing microgreen soil

The tray is full of stems, broken microgreens, and roots.

How can the new seeds be able to get good seed-to-soil contact with all that junk on the soil?

Decaying Microgreens

Once the tray has been replanted, won’t the decaying microgreens from the first harvest cause disease issues like damping-off disease?

Damping off disease of microgreens
damping-off disease of microgreens

The images above are trays that damping-off disease has ravaged. 

No one wants that.

Mixed Microgreens

Not all seeds germinate simultaneously, so seeds that didn’t grow the first time might once the tray is replanted.

Of course, this isn’t an issue if you’re planting the same variety of seeds or don’t care what does grow. But there are times when mixed microgreens wouldn’t be welcomed.

Lack of Nutrition

Will the soil have enough nutrients to grow a decent tray of microgreens? The most common microgreen soils are basically inert (peat moss and coconut coir), so did the soil give up all of its nutrients during the first planting?

Need Answers to Those Questions

Those are the questions we need to answer. 

The biggest concern is disease. Not only the damping-off disease shown in the photos above, but also bacterial growth such as E-coli and other little buggers that can make us sick. Though rare, why increase the chances?

Our guess, however, is that there won’t be good seed-to-soil contact, and germination will be low on the second planting.

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Our Test Reusing Microgreen Soil

In one tray, we planted Triton Radish seeds on top of the microgreen stubble and grew them using the weighted method.

We planted Wasabi Mustard seeds on top of the microgreen stubble with the second tray and grew them using the dome method.

Lastly, we dumped out the soil, roots, and stubble and removed as much as possible. Then we put the used microgreen soil back into the tray and sowed Waltham Broccoli seeds.

Reusing Microgreen Soil the Video

We created a video of the process, discussed the problems, and presented you with the results.

We hope you watch the video. If not, below is a summary of the procedure and results. 

Our recommendation is at the bottom of this article.

Reusing Microgreen Soil For New Plantings

First, we clean up the stems and remaining leaves from the harvest.

For trays that remain in situ, we clipped the microgreen stems close to the soil level and brushed off any remaining stems and leaves. Click on any of the images below to expand them for better viewing.

reusing microgreen soil

If you want to reuse microgreen soil by breaking up the root mass, dump the roots and soil into a large tray and separate the plant matter.

reusing microgreen soil by breaking up the root mass

Separating plant matter from microgreen soil.

Plant Trays Exactly As If Using New Soil

Plant the trays precisely like you’re using new soil. For trays where roots are still in the trays, wet the upper third of the soil profile, spread seeds as evenly as possible on the tray, and mist the seeds to settle them into the plant matter and soil.

When reusing microgreen soil that has been broken up, use something to compact and smooth the soil surface. Then wet the upper third of the soil profile and spread the seeds evenly. Mist the seeds once they have been sown.

planting triton radishes on used microgreen soil.

Sowing Triton Radishes on used microgreen soil. Tested the radish tray by using the weighted blackout method.

planting wasabi mustard seeds on used microgreen soil

Sowing Wasabi Mustard seeds on used microgreen soil. We tested the mustard tray using the domed blackout method.

I have sown Waltham Broccoli seeds on used but broken up and sorted microgreen soil. The broccoli tray is tested using the weighted blackout method.

Testing Blackout Methods

We tested both the weighted and domed blackout methods.

Upside down Home Microgreen tray lids cover the broccoli and radish trays. These two trays are stacked with five pounds of weight on top of them. 

A Home Microgreens Watering Tray turned upside down serves as a dome by placing it on the mustard planting tray.

Teas towels over the trays exclude any light that may reach the seeds. This is shown in the video.

The two trays on the bottom are broccoli and radishes. The mustard is below the upper dome. The writing on the tape is from an earlier test and is irrelevant.

Later, the weight is moved to the top of the domed tray to help keep it on the tray after the tea towels keep knocking the dome off the tray.

Results of Reusing Microgreen Soil for New Plantings

I am still shocked by the results!

In no way did I expect the microgreens to grow this well.

After 3-days

Look at how much the radishes have lifted the upper mustard tray, including the weight.

reused microgreen soil test after 3-days

The radish microgreens are about ready to tip over the Wasabi Mustard tray on top of it, along with the weight.

All three trays of microgreens are ready to be placed under lights after the 72-hour mark.

A 1020 shallow tray is a watering tray for all three microgreen trays. The light system is two inexpensive LED shop lights with a color temperature of 5,000K. 

Below are photos of each tray right after removal from the blackout period.

broccoli microgreens grown on reused microgreen soil

Excellent germination and growth on the broccoli microgreens. No evidence of disease or re-sprouting of the previous crop.

triton radishes grown on reused microgreen soil

Excellent growth and germination of the Triton Radishes. No evidence of disease or broccoli microgreens growing from the previous crop.

wasabi mustard microgreens grown on reused microgreen soil

The Wasabi Mustard microgreens germination is fair; one end has less than 100% germination. The cause might be dryness and nothing to do with the reused soil. However, some broccoli microgreens can be seen growing.

Truthfully, I expected some issues, more so than the few broccoli micros growing in the Wasabi Mustard tray.

At this point, water is added to the watering tray, and any water remaining in the tray after 20 minutes is dumped out.

After 5-days

Five days after reusing microgreen soil to plant new seeds, the Triton radishes are ready to be harvested (middle tray). 

microgreens grown on reused microgreen soil

Left to right: Waltham Broccoli, Purple Triton Radish, and Wasabi Mustard 5 days after being planted on reused microgreen soil.

Both the broccoli and radishes are dead on schedule. Both trays are full and growing well. 

The radishes are ready to be harvested and are removed from the tray.

The Wasabi Mustard, grown using the dome method, is not doing as well as the other two trays.

It’s common for Wasabi Mustard to be thin and narrow at 5-days. But the other microgreens are growing very even and uniform, while the mustard has staggered growth.

Also, many mustard seeds didn’t germinate.

A few broccoli microgreens (not visible in the photo) grew from the previous crop and are mixed in with the mustard seedlings. However, we won’t worry about a few stray broccoli plants.

Reusing Microgreen Soil Test Conclusions


The results are beyond our expectations.

Using the weighted blackout method is the best way to grow a new batch of micros on used microgreen soil.

With the domed method, there isn’t good seed-to-soil contact using a closely cropped tray. The previous crop stubble most likely raised the seed up off the soil and allowed the seeds to dry out.

We should have grown a tray of mustard using soil where we removed the root mass, like with the broccoli in this test.

Maybe we will do that and add the results to this article.

Our Soil Has Nutrients

The reused microgreen soil is the Home Microgreens Blend. It’s a coconut coir-based soil with aged wood compost and other natural composted materials and minerals. 

The results show that the soil has enough nutrients to grow at least two trays of microgreens.

Free Quick Microgreen Guide

Follow the recommendations in this guide, and you’ll be eating microgreens in as few as 7-days!

Growing Microgreens is easy if you follow the simple steps in this colorful guide.

Our Recommendations For Reusing Microgreen Soil

Unfortunately, conclusions aren’t recommendations. 

It’s incredible to ski out of an avalanche, but it’s not recommended.

Or, it’s thrilling to jump off a 35-foot waterfall into the pool of water at the bottom. Still, again, it’s not recommended (especially if you can’t swim like me). 

Maybe those two examples are a bit riskier than growing microgreens in previously used soil, but you get the idea.

We do not recommend reusing microgreen soil.

We showed you it can be done, so if you want to try it, that’s all on you. 

Our Reasoning Why You Shouldn’t Reuse Microgreen Soil

Safety is the number one reason.

We believe eating microgreens grown in soil is safe (especially if bottom watered). Still, the microgreens should be washed before you consume them.

However, there’s a chance that some nasty bacteria, such as E. coli, Salmonella, and Listeria can be found on microgreen seeds. These multiply once they are in a moist environment.

It has been reported that the seeds are the most significant cause bacterial exposure. This is why some governments require sterilization of seeds, especially those grown as sprouts, not as much as microgreens.

As you know, bacteria reproduce exponentially, so the longer they exist in a favorable environment, the more there will be. The more there are, the more likely them becoming a problem. 

This is why we preach bottom watering. Keep the plants and soil surface dry once they start growing. Because moisture and wetness is the problem, we dislike using microgreen mats

So reusing the soil increases the possibility of bacterial and fungal growth.

Reason Two We Don’t Recommend Reusing Microgreen Soil

Clipping the microgreens close to the soil surface takes too long to break up the root mats and sift them out of the soil.

Soil for the Home Microgreen Tray costs about a dollar. I’m busy; there’s always something else to do or something else I should be doing. So taking the time to prepare a tray for re-planting is too much.

In the video, you saw how long it took to prepare the trays, and most of that time, the video was sped up 800 times.

For $1, I’ll compost the old soil and fill my next tray with fresh soil. 

It’s faster and easier, and my garden loves the added compost.

It’s Up To You – We’ve Shown You Can Reuse Microgreen Soil

I don’t think my recommendations are a judgment or a pronouncement.

Recommendations are my opinions on what I would or will do.

You are your own person; search out other sources if you like and make your own decision.

To my surprise, this article shows that microgreens will grow well when you reuse the soil. I knew that the seeds would grow, I didn’t expect them to grow so densely and be so uniform in size.

So I messed up and told many people it couldn’t be done. When I should’ve only said I wouldn’t do it.

What Do You Think? Is It Worth The Risk To Reuse Soil?

Comment below and let us know if you reuse microgreen soil and how you go about it. We are here to learn from each other.


  • Todd

    Todd is the founder of Home Microgreens & the Home Microgreens store. He also writes for several other websites, including MyViewFromTheWoods.com. Todd worked at a large farm market, garden & nursery center for 20 years. Somehow he snuck off to become a geologist and professor before coming back to his senses to write & lecture about microgreens and gardening. When not at the computer, he can be found in the garden, trout stream, or mountain trail with his new Springer Spaniel Caden.

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5 thoughts on “How to Reuse Microgreen Soil: Is It Worth It?”

  1. Christina Berkstresser

    I have been reusing soil for weeks. I cut as you normally would and dump the blocks of dirt into an aluminum baking dish. This goes in the oven at 400 degrees for 30-40 minutes. Then I dump the dirt back in my soil pile. When it’s time to plant again, I bust up the lumps with a trowel and continue as usual. I have not had more problems from fungal growth from using this method. All spores, seeds, and bacteria are killed by the cooking process. This saves me a trip to the hardware store for bags of soil every other week, which is important during COVID. And my micros are doing well!

  2. That’s great, Christina! Heat treatment is an option for sure, but you can imagine why I’m not going to officially recommend it here.
    Have you done a test planting the same batch of seeds in fresh soil along with your treated soil? To see if there’s any nutrient lost in the reused soil? That would be interesting.
    Also, search on the web for hydroponic stores nearby, they will have larger bags of better potting mix that will be cheaper in the long run. Thank you for posting your comment!

  3. Hello,

    Can we compost the used soil or keep it aside for some days after harvesting? Will it help to kill the bacteria?


  4. You can compost the soil, but I wouldn’t use it for microgreens. Bacteria can go dormant and composting will not kill them. It is our recommendation to not reuse the soil for microgreens unless you can sterilize it with heat.

  5. I’ve been trying to get a handle on reusing soil and your video is helpful. I’ve had two trays I started indoors and then moved to the roof (I’m in a Manhattan walk-up) and while the first harvest was great in the sunlight reusing the soil in-doors has revealed some issues. I suspect that the trays being outside (and occasionally attacked by squirrels(!!) has contaminated the soil such that after filtering out the old growth and reseeding I could smell the decay and or disease. Promptly moving them outside again where they have failed almost completely. Maybe too cool, too damp, too acidic(?), etc.
    I’m just a micro green hacker in a tiny apartment at this point but see that the science is going to have to be studied if I’m going to push the margins of compact urban micro farming.

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